Python Science

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1. astropy

A community Python library for Astronomy.

2. bcbio-nextgen

Providing best-practice pipelines for fully automated high throughput sequencing analysis.

3. bccb

Collection of useful code related to biological analysis.

4. Biopython

Biopython is a set of freely available tools for biological computation.

5. cclib

A library for parsing and interpreting the results of computational chemistry packages.

6. Colour

Implementing a comprehensive number of colour theory transformations and algorithms.

7. Karate Club

Unsupervised machine learning toolbox for graph structured data.

8. NetworkX

A high-productivity software for complex networks.

9. NIPY

A collection of neuroimaging toolkits.

10. NumPy

A fundamental package for scientific computing with Python.

11. ObsPy

A Python toolbox for seismology.

12. Open Babel

A chemical toolbox designed to speak the many languages of chemical data.

13. PyDy

Short for Python Dynamics, used to assist with workflow in the modeling of dynamic motion.

14. PyMC

Markov Chain Monte Carlo sampling toolkit.

15. QuTiP

Quantum Toolbox in Python.

16. RDKit

Cheminformatics and Machine Learning Software.

17. SciPy

A Python-based ecosystem of open-source software for mathematics, science, and engineering.

18. SimPy

A process-based discrete-event simulation framework.

19. statsmodels

Statistical modeling and econometrics in Python.

20. SymPy

A Python library for symbolic mathematics.

21. Zipline

A Pythonic algorithmic trading library.